iterations/neb0_image04_iter61.sci output for 3: !!! 3.3A-->1.3A 709 (amd-9) Si-H2N...HCH2-Si two dimer (TSS)
Status: terminated#MD System 2.0 @Title neb0_image04 @Columns AsymmetricAtom AtomicNumber int 0 Connections string {{}} Fractional double {{0.0 0.0 0.0}} Name string {{}} Site int 1 WyckoffPosition int -1 @end @data 6 {} {0.211344481619 0.527565512381 0.318659425889} C1 1 1 14 {} {0.264984016429 0.489783719613 0.277332403657} Si1 2 1 14 {} {0.164545390088 0.535958216639 0.238556103893} Si2 3 1 8 {} {0.276929368231 0.519719843539 0.177341911978} O1 4 1 8 {} {0.304392456844 0.512300113553 0.348038655749} O2 5 1 6 {} {0.262932777663 0.39654855961 0.271844061278} C2 6 1 6 {} {0.132933187084 0.456411976356 0.221038544841} C3 7 1 8 {} {0.188576970987 0.5626090438 0.144110101154} O3 8 1 8 {} {0.129102028397 0.59649763936 0.267857689401} O4 9 1 14 {} {0.355937948323 0.540296079838 0.353802352856} Si3 10 1 7 {} {0.389868932254 0.476228778476 0.394199930202} N1 11 1 14 {} {0.4429511231 0.473911355218 0.347532007013} Si4 12 1 14 {} {0.370587476694 0.422386187431 0.477897621166} Si5 13 1 7 {} {0.341416606274 0.459866750439 0.563913374885} N2 14 1 7 {} {0.459458819622 0.556707580802 0.344096831018} N3 15 1 1 {} {0.199779191781 0.499542446944 0.3776077773} H1 16 1 1 {} {0.219599603328 0.578329464373 0.342390215802} H2 17 1 1 {} {0.252138107476 0.543051674028 0.148431824291} H3 18 1 1 {} {0.25741923877 0.373148866064 0.337293729924} H4 19 1 1 {} {0.294548191388 0.377208349432 0.244960325735} H5 20 1 1 {} {0.236206655469 0.380049511873 0.226536085177} H6 21 1 1 {} {0.106486311396 0.463135505096 0.171041569634} H7 22 1 1 {} {0.117206619536 0.439399444413 0.283359704534} H8 23 1 1 {} {0.154828035351 0.415904180321 0.197741698705} H9 24 1 1 {} {0.169872746863 0.585703860019 0.10144365438} H10 25 1 1 {} {0.100806614469 0.582818551576 0.292869490853} H11 26 1 1 {} {0.372421216467 0.560589651736 0.264702647924} H12 27 1 1 {} {0.355131256917 0.598626928636 0.416047710488} H13 28 1 1 {} {0.469631449582 0.426998791414 0.402653422359} H14 29 1 1 {} {0.444881235 0.449876390409 0.252890549604} H15 30 1 1 {} {0.339197261291 0.372455184418 0.438758002492} H16 31 1 1 {} {0.410379581055 0.388463692318 0.517171354069} H17 32 1 1 {} {0.309746160482 0.476289023755 0.552424875091} H18 33 1 1 {} {0.356885934287 0.491130127124 0.607602937608} H19 34 1 1 {} {0.488446413966 0.566209010195 0.310547771033} H20 35 1 1 {} {0.460079959548 0.580833724577 0.404109478105} H21 36 1 6 {} {0.652658867202 0.639859273464 0.493049346787} C4 37 1 14 {} {0.612609296193 0.575632290485 0.449904122183} Si6 38 1 14 {} {0.64764923428 0.726033694086 0.447270057283} Si7 39 1 8 {} {0.603926087206 0.584226467585 0.341654950787} O5 40 1 8 {} {0.632541608401 0.500434804273 0.470424383911} O6 41 1 6 {} {0.557775445887 0.58039122679 0.506705281948} C5 42 1 6 {} {0.599233937358 0.775613831008 0.491601241921} C6 43 1 8 {} {0.644116426019 0.713900833226 0.337012341838} O7 44 1 8 {} {0.694507838018 0.769482853262 0.46238921143} O8 45 1 14 {} {0.640645837466 0.421947666445 0.442470205931} Si8 46 1 7 {} {0.594562852892 0.370638280749 0.459696391609} N4 47 1 14 {} {0.57498388555 0.321348377137 0.370873637543} Si9 48 1 14 {} {0.569977799555 0.3656895407 0.566352593911} Si10 49 1 7 {} {0.605197382956 0.385191355639 0.65351288715} N5 50 1 7 {} {0.609514508898 0.258341471342 0.333090133047} N6 51 1 1 {} {0.647355227901 0.641043625152 0.565828991888} H22 52 1 1 {} {0.687373570951 0.623522571812 0.481423589511} H23 53 1 1 {} {0.617996697539 0.623620364922 0.314903015682} H24 54 1 1 {} {0.559023834861 0.576046939113 0.57992486067} H25 55 1 1 {} {0.538909243919 0.537822472079 0.479460518006} H26 56 1 1 {} {0.540274364417 0.62686831519 0.489369684242} H27 57 1 1 {} {0.598383262917 0.826237864797 0.462654610036} H28 58 1 1 {} {0.60152914792 0.781423821136 0.564476766452} H29 59 1 1 {} {0.566892074608 0.751965339452 0.477255542653} H30 60 1 1 {} {0.650696789892 0.751526330511 0.298229438363} H31 61 1 1 {} {0.694641530613 0.802964054523 0.509400069935} H32 62 1 1 {} {0.651716448392 0.416873842 0.345444236965} H33 63 1 1 {} {0.679547998336 0.400570201264 0.497457175877} H34 64 1 1 {} {0.533111664246 0.289259066656 0.403800797077} H35 65 1 1 {} {0.56671619481 0.364082940999 0.29108245319} H36 66 1 1 {} {0.532338587811 0.413953284816 0.574011598056} H37 67 1 1 {} {0.553496602144 0.295973726507 0.577581261395} H38 68 1 1 {} {0.611422892541 0.433995192753 0.667400281183} H39 69 1 1 {} {0.632304687098 0.356307966848 0.666750146072} H40 70 1 1 {} {0.633935828336 0.268639546738 0.287940464919} H41 71 1 1 {} {0.61845674875 0.219317692827 0.37260000948} H42 72 1 @end @Columns Cell Constraints string {a b c A B G} Origin int {{0 0 0}} Parameters double {{10.0 10.0 10.0 90.0 90.0 90.0}} PrimitiveData double {{{1.0 0.0 0.0} {0.0 1.0 0.0} {0.0 0.0 1.0}}} RotationMatrix double {{{1.0 0.0 0.0} {0.0 1.0 0.0} {0.0 0.0 1.0}}} SpaceGroup string P1 SpaceGroupNumber int 1 ToCartesians double {{{10.0 0.0 0.0} {0.0 10.0 0.0} {0.0 0.0 10.0}}} ToFractionals double {{{0.10000000000000001 0.0 0.0} {0.0 0.10000000000000001 0.0} {0.0 0.0 0.10000000000000001}}} @end @data {a b c A B G} {0 0 0} {30 20 15 90 90 90} {{1 0 0} {0 1 0} {0 0 1}} {{1 0 0} {0 1 0} {0 0 1}} P1 1 {{30 0 0} {0 20 0} {0 0 15}} {{0.0333333333333 0 0} {0 0.05 0} {0 0 0.0666666666667}} @end @Columns AsymmetricBond Atom1 reference AsymmetricAtom Atom2 reference AsymmetricAtom Key int 0 Order int 0 @end @data 56 41 0 0 50 47 0 0 2 0 0 0 58 42 0 0 44 38 0 0 70 50 0 0 69 49 0 0 34 14 0 0 48 46 0 0 52 36 0 0 6 2 0 0 49 48 0 0 62 45 0 0 21 6 0 0 7 2 0 0 22 6 0 0 8 2 0 0 27 9 0 0 33 13 0 0 37 36 0 0 23 6 0 0 59 42 0 0 12 10 0 0 54 41 0 0 51 36 0 0 61 44 0 0 16 0 0 0 19 5 0 0 20 5 0 0 13 12 0 0 1 0 0 0 43 38 0 0 10 9 0 0 68 49 0 0 53 39 0 0 3 1 0 0 47 46 0 0 60 43 0 0 4 1 0 0 18 5 0 0 5 1 0 0 67 48 0 0 26 9 0 0 32 13 0 0 46 45 0 0 17 3 0 0 11 10 0 0 9 4 0 0 15 0 0 0 25 8 0 0 31 12 0 0 42 38 0 0 64 47 0 0 24 7 0 0 29 11 0 0 40 37 0 0 39 37 0 0 41 37 0 0 66 48 0 0 57 42 0 0 38 36 0 0 65 47 0 0 30 12 0 0 28 11 0 0 71 50 0 0 45 40 0 0 35 14 0 0 55 41 0 0 14 11 0 0 63 45 0 0 @end @Columns Bond AsymmetricBond reference AsymmetricBond Atom1 reference Atom Atom2 reference Atom CellOffset2 int {{0 0 0}} Key int 0 @end @data 0 56 41 {0 0 0} 0 1 47 50 {0 0 0} 0 2 0 2 {0 0 0} 0 3 58 42 {0 0 0} 0 4 38 44 {0 0 0} 0 5 50 70 {0 0 0} 0 6 49 69 {0 0 0} 0 7 14 34 {0 0 0} 0 8 46 48 {0 0 0} 0 9 36 52 {0 0 0} 0 10 2 6 {0 0 0} 0 11 48 49 {0 0 0} 0 12 45 62 {0 0 0} 0 13 21 6 {0 0 0} 0 14 7 2 {0 0 0} 0 15 22 6 {0 0 0} 0 16 8 2 {0 0 0} 0 17 9 27 {0 0 0} 0 18 13 33 {0 0 0} 0 19 36 37 {0 0 0} 0 20 23 6 {0 0 0} 0 21 59 42 {0 0 0} 0 22 10 12 {0 0 0} 0 23 41 54 {0 0 0} 0 24 51 36 {0 0 0} 0 25 44 61 {0 0 0} 0 26 0 16 {0 0 0} 0 27 5 19 {0 0 0} 0 28 5 20 {0 0 0} 0 29 12 13 {0 0 0} 0 30 0 1 {0 0 0} 0 31 38 43 {0 0 0} 0 32 10 9 {0 0 0} 0 33 49 68 {0 0 0} 0 34 39 53 {0 0 0} 0 35 3 1 {0 0 0} 0 36 46 47 {0 0 0} 0 37 43 60 {0 0 0} 0 38 4 1 {0 0 0} 0 39 18 5 {0 0 0} 0 40 1 5 {0 0 0} 0 41 48 67 {0 0 0} 0 42 9 26 {0 0 0} 0 43 13 32 {0 0 0} 0 44 45 46 {0 0 0} 0 45 3 17 {0 0 0} 0 46 10 11 {0 0 0} 0 47 4 9 {0 0 0} 0 48 15 0 {0 0 0} 0 49 8 25 {0 0 0} 0 50 12 31 {0 0 0} 0 51 38 42 {0 0 0} 0 52 64 47 {0 0 0} 0 53 7 24 {0 0 0} 0 54 11 29 {0 0 0} 0 55 40 37 {0 0 0} 0 56 39 37 {0 0 0} 0 57 37 41 {0 0 0} 0 58 66 48 {0 0 0} 0 59 42 57 {0 0 0} 0 60 38 36 {0 0 0} 0 61 65 47 {0 0 0} 0 62 30 12 {0 0 0} 0 63 28 11 {0 0 0} 0 64 50 71 {0 0 0} 0 65 45 40 {0 0 0} 0 66 14 35 {0 0 0} 0 67 55 41 {0 0 0} 0 68 11 14 {0 0 0} 0 69 63 45 {0 0 0} 0 @end @Columns Subset Color string {{#65d9f0}} Criteria string {{}} DisplayLine int 0 IeqJ int 1 IgtJ int 0 IltJ int 0 Length int 1 Name string {{}} Table string {{}} Type string atom UseColor int 0 @end @data @end